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<article xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.3" article-type="research-article"><front><journal-meta><journal-id journal-id-type="issn">2089-0257</journal-id><journal-title-group><journal-title>Jurnal Entomologi Indonesia</journal-title></journal-title-group><issn pub-type="epub">2089-0257</issn><issn pub-type="ppub">1829-7722</issn><publisher><publisher-name>Perhimpunan Entomologi Indonesia</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.5994/jei.20.1.1</article-id><article-categories><subj-group subj-group-type="toc-heading"><subject>INTRODUCTION</subject></subj-group><subj-group subj-group-type="toc-heading"><subject>MATERIAL AND METHOD</subject><subj-group subj-group-type="toc-heading"><subject>Sample collection</subject></subj-group><subj-group subj-group-type="toc-heading"><subject>DNA extraction</subject></subj-group><subj-group subj-group-type="toc-heading"><subject>DNA amplification, electrophoresis, and sequencing</subject></subj-group><subj-group subj-group-type="toc-heading"><subject>Data analysis</subject></subj-group></subj-group><subj-group subj-group-type="toc-heading"><subject>RESULTS</subject><subj-group subj-group-type="toc-heading"><subject>Characterization of FAW in Bogor using</subject></subj-group><subj-group subj-group-type="toc-heading"><subject>Characterization of FAW in Bogor using</subject></subj-group><subj-group subj-group-type="toc-heading"><subject>Landscape structure and genetic variation</subject></subj-group></subj-group><subj-group subj-group-type="toc-heading"><subject>DISCUSSION</subject></subj-group><subj-group subj-group-type="toc-heading"><subject>CONCLUSION</subject></subj-group></article-categories><title-group><article-title>Genetic variation of pest fall armyworm Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae) in different landscapes in Bogor</article-title><subtitle>Keragaman genetik hama ulat gerayak jagung Spodoptera frugiperda (J.E.  Smith) (Lepidoptera: Noctuidae) pada lanskap yang berbeda di Bogor</subtitle></title-group><contrib-group><contrib contrib-type="author"><name><surname>Fahmi</surname><given-names>Fajrin</given-names></name><address><country>Indonesia</country><email>fajrinfahmi@apps.ipb.ac.id</email></address><xref ref-type="aff" rid="AFF-1"/></contrib><contrib contrib-type="author"><name><surname>Kusumah</surname><given-names>R Yayi Munara</given-names></name><address><country>Indonesia</country><email>yayiku@apps.ipb.ac.id</email></address><xref ref-type="aff" rid="AFF-1"/></contrib><contrib contrib-type="author"><name><surname>Buchori</surname><given-names>Damayanti</given-names></name><address><country>Indonesia</country><email>damibuchori@gmail.com</email></address><xref ref-type="aff" rid="AFF-3"/></contrib><aff id="AFF-1"><institution content-type="dept">Departemen Proteksi Tanaman</institution>,<institution>Fakultas Pertanian</institution>,<country>IPB University</country></aff><aff id="AFF-3"><institution content-type="dept">Fakultas Pertanian</institution>,<institution>IPB University; Centre for Trandisclipnary and Sustainability Science</institution>,<country>IPB University</country></aff></contrib-group><pub-date date-type="pub" iso-8601-date="2023-5-31" publication-format="electronic"><day>31</day><month>5</month><year>2023</year></pub-date><volume>20</volume><issue>1</issue><fpage>1</fpage><history><date date-type="received" iso-8601-date="2022-11-14"><day>14</day><month>11</month><year>2022</year></date><date date-type="accepted" iso-8601-date="2023-5-26"><day>26</day><month>5</month><year>2023</year></date></history><permissions><copyright-statement>Copyright (c) 2023 Fajrin Fahmi, R Yayi Munara Kusumah, Damayanti Buchori</copyright-statement><license license-type="open-access"><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref><license-p>This work is licensed under a Creative Commons Attribution 4.0 International License.Authors who publish with this journal agree to the following terms:

Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution 4.0 International License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
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Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).</license-p></license></permissions><self-uri xlink:href="https://jurnal.pei-pusat.org/index.php/jei/article/view/747">https://jurnal.pei-pusat.org/index.php/jei/article/view/747</self-uri><abstract><p><italic>Spodoptera frugiperda</italic> is an invasive pest from the American continent that attacks corn (<italic>Zea mays</italic>) and rapidly invaded Africa and Asia. Two main factors that support migration and population distribution of this species are suitable habitats and human activities. To date, two genetic strains of <italic>S. frugiperda</italic> have been found in corn in Indonesia: the corn strain (CS) and the rice strain (RS). The most accurate gene markers to detect these strains are <italic>COI</italic> and <italic>Tpi</italic>, which are located in mitochondria and Z chromosome. This study aims to determine the existing strains of <italic>S. frugiperda</italic> and their distribution in various landscapes in Bogor Regency. The research was conducted from July 2020 to December 2021 in Bogor, West Java. Sampling of <italic>S. fungiperda</italic> was carried out from corn plants in Leuwisadeng, Pamijahan1, Pamijahan2, Kemang, Tenjolaya, Dramaga, Cigombong, Cijeruk, Tamansari, and Ciomas. Larval samples were collected and preserved using 96% ethanol, followed by DNA extraction, DNA amplification, electrophoresis, and DNA sequencing. Distribution data were analyzedusing QGIS and Google Earth Pro programs, and statistical analysis was performed using SPSS 22. Sequence data were edited using GeneStudio, aligned using ClustalW in BioEdit, and the phylogeny tree was reconstructed using the neighbor-joining method (bootstrap 1000x) using MEGA X. The obtained sequences were compared with sequences from the GenBank® database. The results showed the presence of two distinct strains of <italic>COI </italic>(<italic>COI</italic>-CSh4 and <italic>COI</italic>-RS) and one strain of <italic>Tpi</italic> (<italic>Tpi</italic>-C) in Bogor. The study found no relationship between  thelandscape structure and genetic variation of <italic>S. frugiperda</italic>.</p></abstract><kwd-group><kwd>COI</kwd><kwd>invasive species</kwd><kwd>landscape</kwd></kwd-group></article-meta></front><body><sec><title>INTRODUCTION</title><p>The fall armyworm (FAW) <italic>Spodoptera frugiperda</italic> (J.E. Smith) is an invasive pest of corn (<italic>Zea mays</italic>) originating from the American continent <xref ref-type="bibr" rid="BIBR-4">(F.A.O., 2020)</xref> . In 2016, <italic>S. frugiperda</italic> was reported to invade corn crops in western and central Africa <xref ref-type="bibr" rid="BIBR-6">(Goergen et al., 2016)</xref> and the following year in India, China, Myanmar, and Thailand <xref ref-type="bibr" rid="BIBR-4">(F.A.O., 2020)</xref>. In 2019, this insect invaded corn plants in Indonesia, including North Sumatra <xref ref-type="bibr" rid="BIBR-5">(Girsang et al., 2020)</xref>, West Sumatra, Banten, West Java (Bogor) <xref ref-type="bibr" rid="BIBR-24">(Sartiami et al., 2020)</xref> , Lampung <xref ref-type="bibr" rid="BIBR-25">(Trisyono et al., 2019)</xref>;<xref ref-type="bibr" rid="BIBR-10">(Lestari et al., 2020)</xref>, as well as Garut, Bandung, and Sumedang areas <xref ref-type="bibr" rid="BIBR-11">(Maharani et al., 2019)</xref>. Its large reproductive capacity, absence of diapause, and wide host range (353 plants from 76 families) contribute to its rapid growth and invasion in areas with corn cultivation <xref ref-type="bibr" rid="BIBR-6">(Goergen et al., 2016)</xref>;<xref ref-type="bibr" rid="BIBR-13">(Montezano et al., 2018)</xref>.</p><p>Environmental factors that significantly impact the migration and distribution pattern of <italic>S. frugiperda</italic> are habitats with suitable climates. <italic>S. frugiperda</italic> will stop and settle in habitats with suitable climates. During migration and population dispersal, genetic mixing can also occur, resulting in genetic variation in a location <xref ref-type="bibr" rid="BIBR-21">(Nagoshi et al., 2019)</xref>. Human activities also affect the distribution of <italic>S. frugiperda</italic> by facilitating the movement of plant material from one place to another <xref ref-type="bibr" rid="BIBR-26">(Wang et al., 2020)</xref>.</p><p>The genetic variation of <italic>S. frugiperda</italic> based on the host consists of the corn strain (CS) and the rice strain (RS) <xref ref-type="bibr" rid="BIBR-23">(Pashley, 1986)</xref>;<xref ref-type="bibr" rid="BIBR-9">(Jacobs et al., 2018)</xref>. These strains can be detected using <italic>COI</italic> and <italic>Tpi</italic> (<italic>Triose phosphate isomerase</italic>). In <italic>Tpi</italic>, the strains are represented by <italic>Tpi</italic>-R (rice strain), <italic>Tpi</italic>-C (corn strain), and <italic>Tpi</italic>-H (<italic>Tpi</italic>-C/<italic>Tpi</italic>-R). <italic>Tpi</italic>-H is a heterozygous on the male sex chromosome (ZZ), which can produce <italic>Tpi</italic>-C and <italic>Tpi</italic>-R on different Z chromosomes <xref ref-type="bibr" rid="BIBR-16">(Nagoshi, 2010)</xref> . <italic>COI</italic> area provides information about DNA barcodes, strains, and haplotypes that distinguish between two geographically separated populations. <italic>Tpi</italic> area provides information about the strain on gTpi183Y in exon-4 <xref ref-type="bibr" rid="BIBR-21">(Nagoshi et al., 2019)</xref>. Combining information from the <italic>COI</italic> and <italic>Tpi</italic> areas is very helpful in determining the population origin of <italic>S. frugiperda</italic> at a particular location.</p><p>The corn strain (CS) variation of <italic>COI</italic> is divided into four subgroups based on sites 1164 and 1287. These subgroups are described as CS- h1 (A[1164] A[1287]), CS-h2 [A G], CS-h3 [GA], and CS-h4 [G G]  (Nagoshi <italic>et al.</italic> 2007). Based on these subgroups, the maize strain (<italic>COI</italic>-CS) is classified into three haplotype profiles, namely FAW[TX], FAW[FL], and FAW[M]. FAW [TX] is a haplotype profile of a population with the highest CS-h2 ratio, referring to the profile of a population originating from Texas (USA). FAW [FL] is the haplotype profile that has the most CS-h4 and refers to the population profile originating from Florida (USA). FAW [M] is a combination of the two profiles <xref ref-type="bibr" rid="BIBR-15">(Nagoshi et al., 2008)</xref>;<xref ref-type="bibr" rid="BIBR-17">(Nagoshi et al., 2015)</xref>;<xref ref-type="bibr" rid="BIBR-19">(Nagoshi et al., 2017)</xref>. This haplotype profile is stable and useful in studying the long-distance movements of <italic>S. frugiperda </italic><xref ref-type="bibr" rid="BIBR-15">(Nagoshi et al., 2008)</xref>;<xref ref-type="bibr" rid="BIBR-17">(Nagoshi et al., 2015)</xref>;<xref ref-type="bibr" rid="BIBR-19">(Nagoshi et al., 2017)</xref>.</p><p>Land configuration is one factor that influences the genetic population structure of species. Landscape spatial and dynamic configurations are essential to the genetic processes that construct gene variation within species <xref ref-type="bibr" rid="BIBR-7">(Holderegger &amp; Wagner, 2006)</xref>. A landscape can affect the distribution pattern of a particular genotype that appears only in suitable habitats. The suitable habitat acts as a corridor, while the unsuitable habitat acts as a barrier. This corridor promotes the dispersal process of an insect genotype, generating genetic similarity in a location <xref ref-type="bibr" rid="BIBR-8">(Holzhauer et al., 2006)</xref>;<xref ref-type="bibr" rid="BIBR-12">(Malaquias et al., 2020)</xref>. A study on <italic>Ostrinia furnacalis</italic> (Guenée) demonstrated the relationship between genes and the landscape in insects. The study found that mitochondrial haplotype H12 has a positive correlation with corn crops and a negative correlation with other crops such as vegetables, oilseed crops, and cotton. Haplotype H12 tends to be present in locations with corn crops and absent in locations with other crops. Thus, there is an association between the appearance of haplotype H12 and corn crops <xref ref-type="bibr" rid="BIBR-2">(Dong et al., 2021)</xref>.</p><p>As a new invasive pest in Indonesia, research on the geographical distribution of <italic>S. frugiperda</italic> needs to be carried out. Information about the distribution and genetic variation of <italic>S. frugiperda </italic>is required for control purposes. It is also necessary to determine the origin of <italic>S. frugiperda</italic> and its existing variants. Currently, it is unknown which strains have entered Indonesia, including Bogor, which has also been invaded by <italic>S. frugiperda</italic> in corn. Furthermore, it is essential to examine the habitat landscape that supports specific genetic variants of <italic>S. frugiperda</italic>. Therefore, the aim of this research is to study the geographical distribution and genetic variation of <italic>S. frugiperda</italic> in Bogor Regency, West Java.</p></sec><sec><title>MATERIAL AND METHOD</title><sec><title>Sample collection</title><p>Sampling of <italic>S. frugiperda</italic> was conducted in ten invested corn fields in Bogor Regency<xref ref-type="table" rid="table-31d60102">Table 1</xref>;<xref ref-type="fig" rid="fig-e9d4ec5f">Figure 1</xref>. DNA isolation, amplification, and electrophoresis were carried out at the Insect Pathology Laboratory, Department of Plant Protection, IPB University. The research was conducted from July 2020 to December 2021. Larval samples were taken from each location and put into 96% ethanol. The measured environmental parameters included elevation and the description of the location landscape within a radius of 300 m.</p><fig id="fig-e9d4ec5f"><label>Figure 1</label><caption><p>Sampling sites in Bogor Regency.</p></caption><graphic xlink:href="https://jurnal.pei-pusat.org/index.php/jei/article/download/747/580/7506" mimetype="image" mime-subtype="png"><alt-text>Image</alt-text></graphic></fig><table-wrap id="table-31d60102"><label>Table 1</label><caption><p>Sampling locations of Spodoptera frugiperda in Bogor</p></caption><table frame="box" rules="all"><thead><tr><th colspan="1" rowspan="2" style="" align="center" valign="middle"><p>Location (District)</p></th><th colspan="1" rowspan="2" style="" align="center" valign="middle"><p>Code</p></th><th colspan="1" rowspan="2" style="" align="center" valign="middle"><p>Date</p></th><th colspan="1" rowspan="2" style="" align="center" valign="middle"><p>Elevation (m asl)</p></th><th colspan="1" rowspan="2" style="" align="center" valign="middle"><p>Corn field</p><p>area (m<sup>2</sup>)</p></th><th colspan="2" rowspan="1" style="" align="center" valign="middle"><p>Coordinate</p></th></tr><tr><th colspan="1" rowspan="1" style="" align="center" valign="middle">Latitude</th><th colspan="1" rowspan="1" style="" align="center" valign="middle"><p>Longitude</p></th></tr></thead><tbody><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Leuwisadeng</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">1</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>10 August 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>225</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">940</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°34’11.0”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°34’53.5”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Pamijahan 2</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">2</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>22 July 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>350</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">1.250</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°37’09.7”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°40’09.7”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Kemang</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">3</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>21 July 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>153</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">4.500</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°31’37.8”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°44’47.7”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Tenjolaya</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">4</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>20 July 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>313</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">4.000</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°36’30.7”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°41’57.0”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Dramaga</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">5</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>17 July 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>194</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">500</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°34’50.3”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°43’24.6”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Cigombong</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">6</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>14 July 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>517</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">2.000</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°44’08.6”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°47’53.7”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Cijeruk</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">7</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>30 August 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>457</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">2.500</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°42’11.8”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°48’39.3”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Tamansari</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">8</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>27 July 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>582</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">880</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°38’57.5”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°43’39.4”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Pamijahan 1</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">9</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>24 August 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>595</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">6.000</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°39’17.4”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°41’04.8”E</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Ciomas</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">10</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>25 August 2020</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>234</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">2.300</td><td colspan="1" rowspan="1" style="" align="center" valign="top">6°36’13.8”S</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>106°44’56.6”E</p></td></tr></tbody></table></table-wrap></sec><sec><title>DNA extraction</title><p>DNA was extracted from ten <italic>S. frugiperda</italic> larvae using a modified Doyle and Doyle method <xref ref-type="bibr" rid="BIBR-3">(Doyle &amp; Doyle, 1990)</xref>. About 50-60 mg of larval body parts were put into a 1.5 ml tube along with 400 μl of 65 <sup>o</sup>C CTAB buffer solution (2% CTAB, 50 mM Tris-HCl 0.1 M, 0.02 M EDTA, 1.4 M NaCl, in Mercaptoethanol 1%). Larvae and buffer solution were crushed using a plastic micropestle. The crushed larvae were then vortexed for 10 seconds and incubated in a water bath at 60 <sup>o</sup>C for 30 minutes. The sample was added with a mixture of chloroform: isoamyl alcohol (CI) 24:1 60 μl and vortexed for 10 seconds. The mixture was then centrifuged at 10,000 rpm for 3 minutes. The supernatant formed was transferred to a new tube. The DNA solution was then added with isopropanol at a temperature of -20 <sup>o</sup>C, as much as 0.7 of the total volume of the supernatant. The solution was centrifuged for 3 minutes at 10,000 rpm, then the liquid formed was removed with a micropipette. The pellets were then washed twice with 500 μl of 70% ethanol each and allowed to dry (the tube was inverted) for 12 hours on filter paper at room temperature. Each DNA pellet was dissolved in 100 μl TE. The DNA extraction samples were incubated at 37 <sup>o</sup>C for 1 hour and stored in the refrigerator at -20<sup>o</sup>C.</p></sec><sec><title>DNA amplification, electrophoresis, and sequencing</title><p>Amplification of <italic>COI</italic> segment was done with two kinds of primers<italic>, COI</italic>A and <italic>COI</italic>B. <italic>COI</italic>A primers are 101F (5’-TTCGAGCTGAATTAGGGACTC-3’) and 911R (5’-GATGTAAAAATA TGCTCGTGT-3’) to produce an 811 bp fragment. <italic>COI</italic>B primers are 893F (5’-CA CGAGCATATTTTACATCWGCA-3’) and 1303R (5’- CAGGATAGTCAGAATATCGACG -3’) to obtain a 410 bp fragment<xref ref-type="bibr" rid="BIBR-14">(Nagoshi et al., 2007)</xref>. Meanwhile, <italic>Tpi</italic> amplification was done with primers (5’- GGTGAAATCTCCCCTGCTATG -3’) and 850R (5’- AATTTTATTACCTGCTGTGG -3’) to produce 500 bp fragments<xref ref-type="bibr" rid="BIBR-16">(Nagoshi, 2010)</xref>;<xref ref-type="bibr" rid="BIBR-18">(Nagoshi et al., 2017)</xref>. PCR reactions were performed using the MyTaq™ HS RedMix with standard buffer. PCR was conditioned with an initial denaturation of 94 <sup>o</sup>C for 1 min, followed by 33 cycles (denaturation at 92 <sup>o</sup>C for 30 s; annealing 56 <sup>o</sup>C for 30 s; and elongation at 72 <sup>o</sup>C for 45 s), and final elongation at 72 <sup>o</sup>C for 3 min <xref ref-type="bibr" rid="BIBR-18">(Nagoshi et al., 2017)</xref>. All samples and a 100 bp DNA ladder were separated on a 1.0% agarose gel containing RedSafe™ Nucleic Acid Staining Solution 20,000x (2 μl) in 0.5X Tris-Acetate-EDTA (TAE) buffer. Electrophoresis results were visualized using a UV transilluminator. The PCR results containing <italic>S. frugiperda</italic> DNA along with the primers were sequenced by a third-party company.</p></sec><sec><title>Data analysis</title><p>DNA sequence data were edited using GeneStudio, aligned using ClustalW in BioEdit, and used to reconstruct the phylogeny tree using the neighbor-joining method (bootstrap 1000x) in MEGA X. The sequences obtained were compared with sequences from the GenBank® database. Distribution data were analyzed using QGIS and Google Earth Pro, and SPSS 22 for statistical analysis (t-test). The haplotype profile of the corn strain was calculated using the formula (CSh4 - CSh2)/(CSh4 + CSh2). FAW [TX] has an index value ≤ -0.3; FAW [FL] ≥ 0.1; and FAW [M] -0.3 &lt; x &lt; 0.1 <xref ref-type="bibr" rid="BIBR-19">(Nagoshi et al., 2017)</xref>.</p></sec></sec><sec><title>RESULTS</title><sec><title>Characterization of FAW in Bogor using <italic>Cytochrome Oxidase Subunit I</italic> (COI)</title><p>The phylogenetic tree of <italic>COI</italic> reveals two clades of <italic>S. frugiperda,</italic> corn strain (CS) and rice strain (RS)<xref ref-type="fig" rid="fig-7e8f5db5">Figure 2</xref>. The sequence samples from Bogor cluster with corn and rice strains from Florida (HM136586 and HM136593); Three samples of the corn strain (<italic>COI</italic>-CS) and seven samples of the rice strain (<italic>COI</italic>-RS). The corn strains are found in Leuwisadeng, Kemang, and Cigombong. The rice strains are found in Pamijahan 2, Tenjolaya, Dramaga, Cijeruk, Tamansari, Pamijahan 1, and Ciomas. These corn strain samples are all categorized as the subgroup of haplotype h4 or CS-h4 <xref ref-type="table" rid="table-4ebf54a7">Table 2</xref>. This means that sites 1164 and 1287 show guanine (G).</p></sec><sec><title>Characterization of FAW in Bogor using <italic>Triosephosphate Isomerase</italic> (Tpi)</title><p>Based on site Tpi183Y of exon 4 (gTpi183Y), all samples were classified as C183. This means that all samples found in Bogor Regency were corn strains or <italic>Tpi</italic>-C<xref ref-type="table" rid="table-3d3522e5">Table 3</xref>. Based on sites 192 and 198 of exon 4, the characteristics of <italic>Tpi</italic>-C in Bogor Regency are AfrCa1 and AfrCa2. AfrCa1 has C at sites 192 and 198 (C<sub>192</sub> and C<sub>198</sub>). AfrCa2 has T on sites 192 and 198. Leuwisadeng, Dramaga, Cigombong, Cijeruk, Tamansari, Pamijahan 1, and Ciomas were characterized as AfrCa1. Pamijahan 2, Kemang, and Tenjolaya were characterized as AfrCa2<xref ref-type="table" rid="table-3d3522e5">Table 3</xref>.</p></sec><sec><title>Landscape structure and genetic variation</title><p>The landscape structure around corn fields in Bogor Regency consisted of roads, rivers/ waters, settlements, trees, paddy fields, fields, and abandoned/vacant land<xref ref-type="fig" rid="fig-59869e4a">Figure 3</xref>. The field is a class that has the largest area of the landscape. However, fields in Bogor were not uniformly planted within a 300 m radius. Cornfields accounted for only about 0.25 ha out of more than 10 ha of fields. Each farmer in Bogor Regency had a relatively narrow land area, and they grew crops that were spatially and temporally diverse.</p><fig id="fig-7e8f5db5"><label>Figure 2</label><caption><p>Phylogeny tree based on <italic>Cytochrome Oxidase I</italic> (COI) gene with <italic>neighbor-joining</italic> method and <italic>bootstrap</italic> 1000x that showed two group of strain. The Bogor sequences were submitted on GenBank (Accession Number: ON753769-ON753778).</p></caption><graphic xlink:href="https://jurnal.pei-pusat.org/index.php/jei/article/download/747/580/7507" mimetype="image" mime-subtype="png"><alt-text>Image</alt-text></graphic></fig><table-wrap id="table-4ebf54a7"><label>Table 2</label><caption><p>Polymorphism sites that show subgroup haplotype in corn strain FAW based on COIB</p></caption><table frame="box" rules="all"><thead><tr><th colspan="1" rowspan="2" style="" align="left" valign="top"><p>Code</p></th><th colspan="4" rowspan="1" style="" align="center" valign="middle"><p>Nucleotide site</p></th><th colspan="1" rowspan="2" style="" align="center" valign="middle"><p>Location</p></th><th colspan="1" rowspan="2" style="" align="center" valign="middle">Reference</th></tr><tr><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>1122</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>1125</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>1164</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>1287</p></th></tr></thead><tbody><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>JN573287.1 (h1)</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">T</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>A</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>A</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>USA</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><xref ref-type="bibr" rid="BIBR-14">(Nagoshi et al., 2007)</xref></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>JN573288.1 (h2)</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>USA</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><xref ref-type="bibr" rid="BIBR-14">(Nagoshi et al., 2007)</xref></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>JN573289.1 (h3)</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>USA</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><xref ref-type="bibr" rid="BIBR-14">(Nagoshi et al., 2007)</xref></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>JN573290.1 (h4)</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>USA</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><xref ref-type="bibr" rid="BIBR-14">(Nagoshi et al., 2007)</xref></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>1,3,6</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Bogor, Indonesia</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>This study</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>AfrCsa1</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Afrika</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><xref ref-type="bibr" rid="BIBR-21">(Nagoshi et al., 2019)</xref></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>AfrCsa2</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Afrika</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><xref ref-type="bibr" rid="BIBR-21">(Nagoshi et al., 2019)</xref></td></tr></tbody></table></table-wrap><p>The settlemens had the highest number of patches (NumP), which means they have scattered fragments (up to more than 27 patches/location). The trees did have a relatively large area but were quite fragmented because of the high NumP value <xref ref-type="table" rid="table-09e51a05">Table 4</xref>. The altitude of the land varied from 153 m asl to 595 m asl<xref ref-type="table" rid="table-31d60102">Table 1</xref>.</p><p>Ten landscape variables were statistically analyzed using a t-test based on the <italic>COI</italic> variation (corn and rice strains). The analysis results did not show a significant effect at the 5% level of the ten landscape variables tested<xref ref-type="table" rid="table-09e51a05">Table 4</xref>.</p></sec></sec><sec><title>DISCUSSION</title><p>The phylogenetic tree of <italic>COI-</italic>A showed that <italic>S. frugiperda</italic> in Bogor clustered into two clades, <italic>COI</italic>-CS and <italic>COI</italic>-RS. 70% (7/10) of the samples were <italic>COI</italic>-RS, and 30% (3/10) were <italic>COI</italic>-CS. This result is similar to the genetic variation of <italic>S. frugiperda</italic> in several locations in Indonesia that took samples in 2019 <xref ref-type="bibr" rid="BIBR-1">(Dharmayanthi et al., 2022)</xref> and Southeast Asia that were predominated by <italic>COI</italic>-RS <xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>. Those studies indicate that the <italic>COI</italic>-RS is uniformly predominant in various geographical areas.</p><p>All the corn strains in the Bogor Regency are categorized as h4 (<italic>COI</italic>-CS-h4) and can be clasified as FAW [FL]. It means the haplotype profile of <italic>S. frugiperda</italic> in Bogor Regency is close to <italic>S. frugiperda</italic> in Great Antille and Florida <xref ref-type="bibr" rid="BIBR-18">(Nagoshi et al., 2017)</xref>;<xref ref-type="bibr" rid="BIBR-20">(Nagoshi et al., 2018)</xref>;<xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>. This haplotype profile in Southeast Asia has only been discovered in Myanmar with FAW [FL] and is similar to profiles in India and African countries <xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>. In Indonesia, this profile has never been studied before.</p><p>Based on <italic>Tpi</italic>, all samples in this study showed the corn strain (<italic>Tpi</italic>-C). Recent studies on <italic>Tpi</italic> in <italic>S. frugiperda</italic> in Indonesia <xref ref-type="bibr" rid="BIBR-1">(Dharmayanthi et al., 2022)</xref> and Myanmar <xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>also showed similar results. The difference in the results of these two countries is the presence of <italic>Tpi</italic>-H. It means that Myanmar had rice strain in the form of <italic>Tpi</italic>-H (<italic>Tpi</italic>-R/<italic>Tpi</italic>-C). Therefore, <italic>Tpi</italic>-H can be in Indonesia at any time. Early detection of <italic>Tpi</italic>-H and <italic>Tpi</italic>-R in Indonesia is necessary because these strains have the potential to invade paddy fields <xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>.</p><p>There are two types of <italic>S. frugiperda</italic> in this study, <italic>COI</italic>-RS <italic>Tpi</italic>-C, and <italic>COI</italic>-CS <italic>Tpi</italic>-C. The characterization of <italic>Tpi</italic> and <italic>COI</italic> in this study resulted from the same individual. It means one individual can have rice strain from <italic>COI</italic> (<italic>COI</italic>- RS) and corn strain from <italic>Tpi</italic> marker (<italic>Tpi</italic>-C). The presence of a discordant strain (<italic>COI</italic>-RS <italic>Tpi</italic>-C) in an individual <italic>S. frugiperda</italic> is influenced by the intermating of a female rice strain and a male corn strain <xref ref-type="bibr" rid="BIBR-16">(Nagoshi, 2010)</xref>;<xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>. Most of the <italic>S. frugiperda</italic> population in Indonesia consisted of the <italic>COI</italic>-RS <italic>Tpi</italic>-C strain <xref ref-type="bibr" rid="BIBR-1">(Dharmayanthi et al., 2022)</xref>, similar to populations in China, India, and Africa. However, existing populations in those countries suggest that <italic>S. frugiperda</italic> was introduced in small numbers from the Western Hemisphere or its natural habitat. The small numbers are believed to have come exclusively from corn crops in America. A small portion (about 20%) of those living in the corn crops are <italic>COI</italic>-RS. This strain and other corn strains of <italic>S. frugiperda</italic> invaded Africa and Asia and were detected exclusively in corn. That is why <italic>Tpi</italic> in the eastern hemisphere is more accurate in indicating host-associated strains, while <italic>COI</italic> in the western hemisphere is more informative <xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>.</p><p>The distribution of <italic>S. frugiperda</italic> strains in Bogor Regency based on <italic>COI</italic> indicates that corn strains are found in locations on the outskirts, such as Cigombong, Leuwisadeng, and Kemang<xref ref-type="fig" rid="fig-e9d4ec5f">Figure 1</xref>;<xref ref-type="fig" rid="fig-7e8f5db5">Figure 2</xref>. Meanwhile, rice strains were found in the middle of Bogor. The locations where the rice strain of <italic>COI</italic> was found had different landscape conditions. Tenjolaya (code 4), which has a large agricultural field, can have the same strain as Dramaga (code 5), where the sampling location is in the middle of settlements<xref ref-type="table" rid="table-31d60102">Table 1</xref><xref ref-type="fig" rid="fig-59869e4a">Figure 3</xref> This can also be observed in Pamijahan 1 (code 9), where the highest location exhibits the same strain as low location, such as Dramaga (code 5) and Ciomas (code 10). The result of the t-test also shows no significant difference in the landscape variable. Thus, this study found no significant landscape differences between corn and rice strains <xref ref-type="table" rid="table-09e51a05">Table 4</xref>. There are no visible barriers; only a corridor is found due to the presence of corn crops. However, the corridor could not distinguish between the presence of the two <italic>COI</italic> strains. Thus, this finding supports the idea that the corn strain of <italic>S. frugiperda</italic> in Asia and Africa represents a small fraction compared to the western hemisphere, where it is primarily found in corn crops than paddy fields<xref ref-type="bibr" rid="BIBR-22">(Nagoshi et al., 2020)</xref>. <italic>Tpi</italic> was not statistically tested in this study because all samples exhibited <italic>Tpi</italic>-C, indicating that landscape variables had no significant influence on <italic>Tpi</italic> variation, except for the presence of corn crops. Further investigation into landscape and host strain is necessary, involving additional locations, samples, and a broader radius.</p><table-wrap id="table-3d3522e5"><label>Table 3</label><caption><p>Polymorphism sites that show strains FAW based on Tpi</p></caption><table frame="box" rules="all"><thead><tr><th colspan="1" rowspan="2" style="" align="left" valign="middle"><p>Code</p></th><th colspan="8" rowspan="1" style="" align="center" valign="top"><p>Nucleotide site (exon 4)</p></th><th colspan="1" rowspan="2" style="" align="center" valign="middle">Location</th></tr><tr><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>129</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>144</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>165</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>168</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>180</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>183</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>192</p></th><th colspan="1" rowspan="1" style="" align="center" valign="top"><p>198</p></th></tr></thead><tbody><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>GQ411914.1 (<italic>Tpi</italic>-C)</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>G</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>T</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">C</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>T</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>T</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>USA<sup>1</sup></p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>AfrCa1 (<italic>Tpi</italic>-C)</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top">C</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Africa<sup>2</sup></p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>AfrCa2 (<italic>Tpi</italic>-C)</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Africa<sup>2</sup></p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>1,5,6,7,8,9,10</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top">C</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Bogor</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>2,3,4</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Bogor</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Consensus <italic>Tpi</italic>-R</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>T</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">T</td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Western Hemisphere<sup>2</sup></p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Consensus <italic>Tpi</italic>-C</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>-</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top">-</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Y*</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Y*</p></td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>Western Hemisphere<sup>2</sup></p></td></tr></tbody></table><table-wrap-foot><p>*Y= C/T; <sup>1  </sup><xref ref-type="bibr" rid="BIBR-16">(Nagoshi, 2010)</xref> ; <sup>2</sup>  <xref ref-type="bibr" rid="BIBR-21">(Nagoshi et al., 2019)</xref></p></table-wrap-foot></table-wrap><fig id="fig-59869e4a"><label>Figure 3</label><caption><p>Landscape map in 300 m radius from sampling point in Bogor Regency that grouped by <italic>COI-CS</italic> and <italic>COI</italic>-RS.</p></caption><graphic xlink:href="https://jurnal.pei-pusat.org/index.php/jei/article/download/747/580/7508" mimetype="image" mime-subtype="png"><alt-text>Image</alt-text></graphic></fig><table-wrap id="table-09e51a05"><label>Table 4</label><caption><p>Statistical analysis (t-test) of landscape variables based on COI corn (n = 3) and rice (n = 7) strain</p></caption><table frame="box" rules="all"><thead><tr><th colspan="1" rowspan="1" style="" align="left" valign="top"><p>Variable</p></th><th colspan="3" rowspan="1" style="" align="center" valign="top"><p>Corn strain (Means ± SD)</p></th><th colspan="3" rowspan="1" style="" align="center" valign="top">Rice strain (Means ± SD)</th><th colspan="1" rowspan="1" style="" align="center" valign="top">P-value</th></tr></thead><tbody><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>CA Trees (ha)</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">5.97 ± 1.27</td><td colspan="3" rowspan="1" style="" align="center" valign="top">6.50 ± 3.04</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.78</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>NumP Trees</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">11.00 ± 2.65</td><td colspan="3" rowspan="1" style="" align="center" valign="top">18.29 ± 8.48</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.20</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>CA Settlements (ha)</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">6.68 ± 2.44</td><td colspan="3" rowspan="1" style="" align="center" valign="top">6.73 ± 3.17</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.98</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>NumP Settlements</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">20.00 ± 8.54</td><td colspan="3" rowspan="1" style="" align="center" valign="top">27.00 ± 6.66</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.20</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>CA Fields (ha)</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">7.50 ± 4.59</td><td colspan="3" rowspan="1" style="" align="center" valign="top">10.38 ± 6.07</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.49</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>NumP Fields</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">9.67 ± 6.35</td><td colspan="3" rowspan="1" style="" align="center" valign="top">8.57 ± 5.16</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.78</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>CA Paddy fields (ha)</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">5.48 ± 5.34</td><td colspan="3" rowspan="1" style="" align="center" valign="top">2.20 ± 2.70</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.22</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>NumP Paddy fields</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">2.67 ± 2.52</td><td colspan="3" rowspan="1" style="" align="center" valign="top">3.14 ± 2.48</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.79</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Elevation (m asl)</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">298.33 ± 192.76</td><td colspan="3" rowspan="1" style="" align="center" valign="top">389.29 ± 160.03</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.46</p></td></tr><tr><td colspan="1" rowspan="1" style="" align="left" valign="top"><p>Corn field area (m<sup>2</sup>)</p></td><td colspan="3" rowspan="1" style="" align="center" valign="top">2480.00 ± 1827.90</td><td colspan="3" rowspan="1" style="" align="center" valign="top">2490.00 ± 1946.20</td><td colspan="1" rowspan="1" style="" align="center" valign="top"><p>0.99</p></td></tr></tbody></table><table-wrap-foot><p>CA: class area; NumP: number of patch.</p></table-wrap-foot></table-wrap></sec><sec><title>CONCLUSION</title><p>The genetic variation of <italic>S. frugiperda</italic> in corn fields in Bogor, as determined by <italic>COI</italic> analysis, consisted of three samples of <italic>COI-</italic>CS and seven samples of <italic>COI</italic>-RS. All <italic>COI</italic>-CS samples have h4 haplotypes and can be classified as FAW [FL] profile haplotypes. Based on <italic>Tpi</italic> analysis, all ten samples exhibit the <italic>Tpi</italic>-C strain. Geographically, <italic>COI</italic>-CS is predominantly found in the outskirts of Bogor Regency, while <italic>COI</italic>-RS is primarily found in the central area of Bogor Regency. 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